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March 2017

Using Next Generation Sequencing Data Analysis for the Clinic

March 31, 2017 @ 4:00 pm - 7:00 pm

Contents: As part of the CASyM Winter School, we will give a short summary for the current usage and possible future applications of the Next Generation Sequencing (NGS) technology in the clinical context. This will be followed by a showcase project that involves a NGS dataset analysis of clinical data with the help of our recently published analysis workflow named TRAPLINE, which also utilizes the Galaxy-RNA-Workbench. Using latest technologies, we will explain and show all relevant analysis steps during the…

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October 2017

de.NBI/de.STAIR Training Course: A primer for RNA-Seq processing, interpreting and visualization

October 4, 2017 @ 8:00 am - October 6, 2017 @ 5:00 pm
University of Freiburg, Faculty of Biology
Freiburg (Breisgau), 79104 Germany
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Unix Shell how-to; Introduction to Galaxy RNA-workbench; RNA-Seq data analysis and workflow development; Fundamental statistics and file formats; Functional RNA analysis; Visualization concepts

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March 2018

Introduction to RNA-Seq data analysis with Galaxy

March 7, 2018
Kiel, Am Botanischen Garten 1-9, Room E49
Kiel, Germany
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RNA-Seq, quality control, assembly, quantification, visualization

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June 2018

de.NBI/de.STAIR Training Course: A primer for RNA-Seq processing, interpreting and visualization

June 27, 2018 @ 9:00 am - June 29, 2018 @ 1:00 pm
Jena, Beutenbergstra├če 11
Jena, 07745 Germany
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Flyer: Content: This workshop intends to introduce the graphical, web-based Galaxy RNA-workbench (https://usegalaxy.org) for customized analysis of RNA-Seq data. Therefore, we will present Linux and Docker backgrounds, introduce methods for exploration of NGS data and fundamental statistics. In practical tutorials, workflow development, functional predictions of RNAs and visualization strategies for metatranscriptomic data will be trained. Topics: Introduction to Galaxy RNA-workbench RNA-Seq data analysis and workflow development Fundamental statistics and file formats Functional RNA analysis Basic visualization   Prerequisites: This workshop…

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